Cold and Arid Research Network of Lanzhou university (eddy covariance system of Minqin station, 2021)

This dataset contains the flux measurements from the Minqin station eddy covariance system (EC) in the middle reaches of the Shiyanghe integrated observatory network from January 1 to December 27 in 2021. The site (103.668E, 39.208N) was located on a alpine meadow in the Wuwei, Gansu Province. The elevation is 1020 m. The EC was installed at a height of 4.0 m, and the sampling rate was 10 Hz. The sonic anemometer faced north, and the separation distance between the sonic anemometer and the CO2/H2O gas analyzer (CSAT3&Li7500A) was 0.17 m. The raw data acquired at 10 Hz were processed using the Eddypro post-processing software, including the spike detection, lag correction of H2O/CO2 relative to the vertical wind component, sonic virtual temperature correction, coordinate rotation (2-D rotation), corrections for density fluctuation (Webb-Pearman-Leuning correction), and frequency response correction. The EC data were subsequently averaged over 30 min periods. The observation data quality was divided into three classes according to the quality assessment method of stationarity (Δst) and the integral turbulent characteristics test (ITC): class 1-3 (high quality), class 4-6 (good), class 7-8 (poor, better than gap filling data), class9 (rejected). In addition to the above processing steps, the half-hourly flux data were screened in a four-step procedure: (1) data from periods of sensor malfunction were rejected; (2) incomplete 30 min data were rejected when the missing data constituted more than 3% of the 30 min raw record; and data were rejected at night when the friction velocity (u*) was less than 0.1 m/s. There were 48 records per day, and the missing data were replaced with -6999. Suspicious data were marked in red. The released data contained the following variables: data/time, wind direction (Wdir, °), wind speed (Wnd, m/s), the standard deviation of the lateral wind (Std_Uy, m/s), virtual temperature (Tv, ℃), H2O mass density (H2O, g/m3), CO2 mass density (CO2, mg/m3), friction velocity (ustar, m/s), stability (z/L), sensible heat flux (Hs, W/m2), latent heat flux (LE, W/m2), carbon dioxide flux (Fc, mg/ (m2s)), quality assessment of the sensible heat flux (QA_Hs), quality assessment of the latent heat flux (QA_LE), and quality assessment of the carbon flux (QA_Fc). In this dataset, the time of 0:30 corresponds to the average data for the period between 0:00 and 0:30; the data were stored in *.xls format. Detailed information can be found in the suggested references.

0 2022-05-17

Cold and Arid Research Network of Lanzhou university (Phenology camera observation data set of Liancheng Station, 2021)

The data set contains the phenological camera observation data of Minqin station of Lanzhou University cold and arid area scientific observation network in Shiyang River Basin from March 1, 2021 to December 31, 2021. The longitude and latitude of the observation points are 103.668e, 39.208n and 1020m above sea level. The data is processed using the software package independently developed by Beijing Normal University. The phenological camera collects data in a downward way. The resolution of shooting data is 2592 * 1944, and the shooting time and frequency can be specified. For the calculation of greenness index phenological period, it is necessary to calculate the relative greenness index according to the region of interest (GCC, green chromatographic coordinate formula is GCC = g / (R + G + b), and R, G and B are the pixel values of red, green and blue channels of the image), then fill in the invalid values and filter and smooth them, and finally determine the key phenological period parameters according to the growth curve fitting, such as the start date, peak and end date of the growth season; For the coverage, data preprocessing is carried out first, the image with less strong illumination is selected, and then the image is divided into vegetation and soil. The proportion of vegetation pixels in the calculation area of each image is calculated as the corresponding coverage of the image. After the time series data is extracted, the original coverage data is smoothed and filtered according to the time window specified by the user. The filtered result is the final time series coverage. This data set includes the relative greenness index (GCC).

0 2022-05-17

Cold and Arid Research Network of Lanzhou university (an observation system of Meteorological elements gradient of Minqin Station, 2021)

This dataset includes data recorded by the Cold and Arid Research Network of Lanzhou university obtained from an observation system of Meteorological elements gradient of Minqin Station from January 1 to December 31, 2021. The site (103.668E, 39.208N) was located in Minqin, Gansu Province. The elevation is 1020 m. The installation heights and orientations of different sensors and measured quantities were as follows: air temperature and humidity profile (4 and 8 m, towards north), wind speed and direction profile (windsonic; 4, and 8 m, towards north), air pressure (1.5 m), rain gauge (4 m), four-component radiometer (4 m, towards south), infrared temperature sensors (4 m, towards south, vertically downward), photosynthetically active radiation (4 m, towards south), soil heat flux (-0.05 m and -0.1m in south of tower), soil temperature/ moisture/ electrical conductivity profile (-0.1 and -0.2 m in south of tower), sunshine duration sensor (4 m, towards south). The observations included the following: air temperature and humidity (Ta_1_4_1, Ta_1_8_1; RH_1_4_1, RH_1_8_1) (℃ and %, respectively), wind speed (WS_1_4_1, WS_1_8_1) (m/s), wind direction (WD_1_4_1, WD_1_8_1) (°), air pressure (PA_1_1_1) (hpa), precipitation (P_1_4_1) (mm), four-component radiation (SWIN_1_4_1, incoming shortwave radiation; SWOUT_1_4_1, outgoing shortwave radiation; LWIN_1_4_1, incoming longwave radiation; LWOUT_1_4_1, outgoing longwave radiation; Rn_1_4_1, net radiation) (W/m^2), infrared temperature (TC_1_4_1) (℃), photosynthetically active radiation (PPFD_1_4_1) (μmol/ (s/m^2)), soil heat flux (SHF_1_5_1, SHF_1_10_1) (W/m^2), soil temperature (TS_1_10_1, TS_1_20_1) (℃), soil moisture (SWC_1_10_1, SWC_1_10_1) (%, volumetric water content), soil water potential (SWP_1_10_1 , SWP_1_20_1)(kpa) , soil conductivity (EC_1_10_1, EC_1_20_1) (μs/cm), Sun_time_1_4_1 (h). The data processing and quality control steps were as follows: (1) The AWS data were averaged over intervals of 10 min for a total of 144 records per day. Missing or abnormal data is replaced by – 6999. (2) Data in duplicate records were rejected. (3) Unphysical data were rejected. (4) The data marked in red are problematic data. (5) The format of the date and time was unified, and the date and time were collected in the same column, for example, date and time: 2021-6-10 10:30.

0 2022-05-17

Genomic studies of drought tolerance mechanisms of a typical plant in Heihe basin - dataset II (2014-2015)

一. Data overview This data interchange is the second data interchange of "genomics research on drought tolerance mechanism of typical desert plants in heihe basin", a key project of the major research program of "integrated research on eco-hydrological processes in heihe basin".The main research goal of this project is a typical desert sand Holly plants as materials, using the current international advanced a new generation of gene sequencing technology to the whole genome sequence and gene transcription of Holly group sequence decoding, so as to explore related to drought resistance gene and gene groups, and transgenic technology in model plants such as arabidopsis and rice) verify its drought resistance. 二, data content 1.Sequencing of the genome and transcriptome of lycophylla SPP. The genome size of Mongolian Holly was about 926 Mb, GC content 36.88%, repeat sequence proportion 66%, genome heterozygosity rate 0.56%, which indicated that the genome has many repeat sequences, high heterozygosity and belongs to a complex genome.Based on the predicted sequence results, we subsequently carried out in-depth sequencing of the genome of lysiopsis SPP. The obtained data were assembled to obtain a 937 Mb genome sequence (table 1), which was basically the same as the predicted genome size.Through to the sand Holly transcriptome sequencing and sequence assembly (table 2), received more than 77000 genes coding sequence (Unigene), these sequences are comments found that most of the gene sequence and legumes and soybean, garbanzo beans and bean has a higher similarity (figure 1), consistent with the fact of sand ilex leguminous plants. 一), and the sand Holly is a leguminous plants consistent with the fact. 2.Discovery of simple repeat sequence (SSR) molecular markers of sand Holly: There is a transcriptome data set of sand Holly in the network public database, and the sample collection site is zhongwei city, ningxia.But this is the location of the project team samples in minqin county, gansu province, in order to study whether this sand in different areas of the Holly sequence has sequence polymorphism, we first identify the minqin county plant samples in the genomes of simple sequence repeat (SSR) markers (table 3), and then, compares the transcriptome sequences of plant sample, found in part of SSR molecular marker polymorphism (table 4), these molecular markers could be used for the species of plant genetic map construction, QTL mapping and genetic diversity analysis in the study. 三, data processing instructions Sample collection place: minqin county, gansu province, latitude and longitude: N38 ° 34 '25.93 "E103 ° 08' 36.77".Genome sequencing: a total of 8 genomic DNA libraries of different sizes were constructed and determined by Illumina HiSeq 2500 instrument.Transcriptome sequencing: a library of 24 transcriptome mrnas was constructed and determined by Illumina HiSeq 4000. 四, the use of data and meaning We selected a typical desert plant as the research object, from the Angle of genomics, parse the desert plant genome and transcriptome sequences, excavated its precious drought-resistant gene resources, and to study their drought resistance mechanism of favorable sand Holly this ancient and important to the utilization of plant resources, as well as the heihe river basin of drought-resistant plant genetic breeding, ecological restoration and sustainable development.

0 2020-07-29