RNA-seq data of human umbilical vein endothelial cell samples

RNA-seq data of human umbilical vein endothelial cell samples


1) Data content: this data is the placenta umbilical cord endothelial cells (HUVEC) transcriptome data of high altitude Tibetan and lowland Han population generated during the implementation of the project, including the RNA-seq data of 3 high altitude Tibetan HUVEC and 3 lowland Han placenta HUVEC. Each RNA-seq data is 6G sequencing depth, which can be used to study the effect of high altitude Tibetan population and lowland Han population for gene expression patterns at hypoxic environment.

2) Data source and processing method: own data, the pair end 150bp sequencing method using Illumina x-ten sequencing platform.

3) Data quality: 6G data depth, q30 > 90%.

4) Results and prospects of data application: the data will be used to validate the gene expression pattern of high altitude hypoxia adaptation gene to hypoxia environment at the cell level.


File naming and required software

A represents Tibetan adaptive cell line; W represents Han wild type cell line.


Data Citations Data citation guideline What's data citation?
Cite as:

Qi, X. (2020). RNA-seq data of human umbilical vein endothelial cell samples. National Tibetan Plateau Data Center, DOI: 10.11888/Ecolo.tpdc.270375. CSTR: 18406.11.Ecolo.tpdc.270375. (Download the reference: RIS | Bibtex )

Related Literatures:

1. Peng, Y., Cui, C., He, Y., Ouzhuluobu, Zhang, H., Yang, D., Zhang, Q., Bianbazhuoma, Yang, L., He, Y., Xiang, K., Zhang, X., Bhandari, S., Shi, P., Yangla, Dejiquzong, Baimakangzhuo, Duojizhuoma, Pan, Y., Cirenyangji, Baimayangji, Gonggalanzi, Bai, C., Bianba, Basang, Ciwangsangbu, Xu, S., Chen, H., Liu, S., Wu, T., Qi, X. & Su, B. (2017). Down-regulation of EPAS1 transcription and genetic adaptation of Tibetans to high-altitude hypoxia. Mol Biol Evol 34, 818-830.( View Details | Download | Bibtex)

Using this data, the data citation is required to be referenced and the related literatures are suggested to be cited.


Support Program

Pan-Third Pole Environment Study for a Green Silk Road-A CAS Strategic Priority A Program (No:XDA20000000)

Copyright & License

To respect the intellectual property rights, protect the rights of data authors,expand servglacials of the data center, and evaluate the application potential of data, data users should clearly indicate the source of the data and the author of the data in the research results generated by using the data (including published papers, articles, data products, and unpublished research reports, data products and other results). For re-posting (second or multiple releases) data, the author must also indicate the source of the original data.

Example of acknowledgement statement is included below: The data set is provided by National Tibetan Plateau Data Center (http://data.tpdc.ac.cn).


License: This work is licensed under an Attribution 4.0 International (CC BY 4.0)


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  • Temporal resolution: Yearly
  • Spatial resolution: 100km - 1000km
  • File size: 24,000 MB
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  • Access: Protection period
  • Temporal coverage: 2018
  • Updated time: 2021-04-19

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Contacts
: QI Xuebin  

Distributor: National Tibetan Plateau Data Center

Email: data@itpcas.ac.cn

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