Plant Hi-C sequencing data (2019)

Plant Hi-C sequencing data (2019)


Through the bioinformatics analysis after Hi-C sequencing, most of the sequences in the preliminary assembled genome sketch can be located on the chromosome, and the sequence and direction of these sequences on the chromosome can be determined, which lays an important foundation for obtaining high-quality sequence map. Therefore, by using this technology, the research team can divide the sequence in the sketch of the genome sequence of Aralia racemosa into groups with the same chromosome number as the species, and determine the order and orientation of all sequences in each group. After that, we can combine the data of reference genome, EST sequence, related species and genetic map of Aralia racemosa The accuracy of grouping and the order and direction between sequences were evaluated.


File naming and required software

File name: sequencing data is stored in text format, and the file name is "20181106lachesis"_ assembly.fasta ”, of which 2018 represents the year and 1106 represents the date. Data reading mode: the data can be opened directly with a text program. (e.g. EDITPLUS)


Data Citations Data citation guideline What's data citation?
Cite as:

Duan, Y. (2020). Plant Hi-C sequencing data (2019). National Tibetan Plateau Data Center, DOI: 10.11888/Paleoenv.tpdc.270898. CSTR: 18406.11.Paleoenv.tpdc.270898. (Download the reference: RIS | Bibtex )

Related Literatures:

1. Yang, Y.Q., Sun, X.D., Kong, X.X., Wang, C.T., Yang, Y., Yin, X., Yang, D.N., Duan, Y.W., & Yang, Y.P. (2019). The Turnip Genome Provides Insights into Independent Evolution of Glucosinolate Biosynthesis, Nature Communications, 34(4), 848-854.( View Details | Bibtex)

Using this data, the data citation is required to be referenced and the related literatures are suggested to be cited.


Support Program

Pan-Third Pole Environment Study for a Green Silk Road-A CAS Strategic Priority A Program (No:XDA20000000)

Copyright & License

To respect the intellectual property rights, protect the rights of data authors,expand servglacials of the data center, and evaluate the application potential of data, data users should clearly indicate the source of the data and the author of the data in the research results generated by using the data (including published papers, articles, data products, and unpublished research reports, data products and other results). For re-posting (second or multiple releases) data, the author must also indicate the source of the original data.

Example of acknowledgement statement is included below: The data set is provided by National Tibetan Plateau Data Center (http://data.tpdc.ac.cn).


License: This work is licensed under an Attribution 4.0 International (CC BY 4.0)


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Keywords
Geographic coverage
East: 97.00 West: 95.00
South: 31.00 North: 32.00
Details
  • Temporal resolution: Yearly
  • Spatial resolution: 10km - 100km
  • File size: 395 MB
  • Views: 1,581
  • Downloads: 2
  • Access: Requestable
  • Temporal coverage: 2018-12-07 To 2023-01-06
  • Updated time: 2021-04-19
Contacts
: DUAN Yuanwen  

Distributor: National Tibetan Plateau Data Center

Email: data@itpcas.ac.cn

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