Sequencing of intestinal microorganisms of domestic animals in QTP (2019)

Sequencing of intestinal microorganisms of domestic animals in QTP (2019)


In order to describe the disease situation of the main domesticated animals in and around the Qinghai Tibet Plateau, the epidemic situation of the main domestic animals in the Qinghai Tibet Plateau was investigated, and the genetic samples and intestinal microbial samples of the main epidemic diseases of the main domestic animals were collected. We collected Camel dung at Mohe camel farm, Ulan County, Haixi Mongolian and Tibetan Autonomous Prefecture, Qinghai Province. This data set is the 16S rRNA sequencing data of camel's intestinal microorganism in Qinghai Province. By extracting the total DNA of camel faeces, we designed primers to amplify the v3-v4 region gene fragment of bacteria, and then sequenced the corresponding data with high-throughput of the second generation. 44 samples were sequenced. This data set can be used to mine genetic resources of disease resistant individuals and find corresponding candidate genes.


File naming and required software

File name: The data is stored in text format, and the file names are "duanziyuan-1.fastq", "duanziyuan-2.fastq".
Data reading: The two terminal data are used in pairs, and the data can be opened with the second generation sequencing data analysis software.


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Cite as:

Duan, Z. (2020). Sequencing of intestinal microorganisms of domestic animals in QTP (2019). National Tibetan Plateau Data Center, DOI: 10.11888/Ecolo.tpdc.270462. CSTR: 18406.11.Ecolo.tpdc.270462. (Download the reference: RIS | Bibtex )

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Support Program

Pan-Third Pole Environment Study for a Green Silk Road-A CAS Strategic Priority A Program (No:XDA20000000)

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Example of acknowledgement statement is included below: The data set is provided by National Tibetan Plateau Data Center (http://data.tpdc.ac.cn).


License: This work is licensed under an Attribution 4.0 International (CC BY 4.0)


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Keywords
Geographic coverage
East: 98.20 West: 98.90
South: 36.79 North: 37.12
Details
  • Temporal resolution: Yearly
  • Spatial resolution: 10km - 100km
  • File size: 1,200 MB
  • Views: 1,786
  • Downloads: 5
  • Access: Requestable
  • Temporal coverage: 2018-07-07 To 2020-07-06
  • Updated time: 2021-04-19
Contacts
: DUAN Ziyuan  

Distributor: National Tibetan Plateau Data Center

Email: data@itpcas.ac.cn

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