Plant genome re sequencing data in QTP (2019)

Plant genome re sequencing data in QTP (2019)


In order to study the relationship between the spread of cyanine and human activities, we will resequence the cyanine varieties from the Qinghai Tibet Plateau and its surrounding areas, as well as Pakistan, India, Nepal, Germany, Japan and other places. At the same time, we will cluster the gene families, and make statistics of unique, shared genes and gene families. In addition, we will also carry out the analysis of gene family expansion and contraction, and system development Tree construction, genome-wide replication events and other analysis. The aim is to analyze the molecular basis of adaptation of traditional species of cyanine to the plateau under the dual pressures of human activities and regional climate. Therefore, this study is helpful to reveal the adaptive mechanism of cyanine to adapt to the plateau ecological environment and the influence of artificial domestication and human selection on its genetic differentiation in the process of evolution.


File naming and required software

File name: Brassicarapalinn_K778-S01-01-R01_good_2.fq.gz、Brassicarapalinn_K778-S01-01-R01_good_1.fq.gz. Among them,Brassicarapalinn_K778-S01-01 represents the species category and number, R01 represents the sample number, and_1or_2represents the segmented part of the data.


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Cite as:

(2020). Plant genome re sequencing data in QTP (2019). National Tibetan Plateau Data Center, DOI: 10.11888/Socioeco.tpdc.270394. CSTR: 18406.11.Socioeco.tpdc.270394. (Download the reference: RIS | Bibtex )

Related Literatures:

1. Yang, Y.Q., Sun, X.D., Kong, X.X., Wang, C.T., Yang, Y., Yin, X., Yang, D.N., Duan, Y.W., & Yang, Y.P. (2019). The Turnip Genome Provides Insights into Independent Evolution of Glucosinolate Biosynthesis, Nature Communications, 34(4), 848-854.( View Details | Bibtex)

Using this data, the data citation is required to be referenced and the related literatures are suggested to be cited.


Support Program

Pan-Third Pole Environment Study for a Green Silk Road-A CAS Strategic Priority A Program (No:XDA20000000)

Copyright & License

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Example of acknowledgement statement is included below: The data set is provided by National Tibetan Plateau Data Center (http://data.tpdc.ac.cn).


License: This work is licensed under an Attribution 4.0 International (CC BY 4.0)


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Keywords
Geographic coverage
East: 97.00 West: 95.00
South: 31.00 North: 32.00
Details
  • Temporal resolution: Yearly
  • Spatial resolution: 1km - 10km
  • File size: 48,230 MB
  • Views: 2,087
  • Downloads: 5
  • Access: Requestable
  • Temporal coverage: 2019-06-09 To 2023-07-09
  • Updated time: 2021-04-19
Contacts

Distributor: National Tibetan Plateau Data Center

Email: data@itpcas.ac.cn

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